PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0579s0014.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 300aa    MW: 32648.8 Da    PI: 6.551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0579s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20146196255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp     k +r++lg+++t+ eAa+a++aa+ k++g
  Kalax.0579s0014.1.p 146 KYRGVRRRP-WGKYAAEIRDP---ArKGARVWLGTYDTPIEAARAYDAAAFKMRG 196
                          8********.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.777146204IPR001471AP2/ERF domain
CDDcd000181.69E-20146204No hitNo description
PfamPF008473.8E-15146196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-31146205IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23146206IPR016177DNA-binding domain
SMARTSM003801.1E-36146210IPR001471AP2/ERF domain
PRINTSPR003673.8E-13147158IPR001471AP2/ERF domain
PRINTSPR003673.8E-13186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MLPSTSAETT PQVEKAASVF AEPQTRHHIF KPRPYFNSFT LQSTLRSETR RSEEASFLDS  60
IQQFLLTDDF ASESSLQTLL SDSGLTSSVG SSRHSVAAVK TETEVSDESW VSTGGNGLPP  120
KPSRLSSRKP VALKVAIPAG AEEDVKYRGV RRRPWGKYAA EIRDPARKGA RVWLGTYDTP  180
IEAARAYDAA AFKMRGSKAI VNFPLEVGKV RTAAEEEEEM VAAESVDAPA RKRRKEVDME  240
IGDGEKVMVK MEDASVSAAA MPLTPSSWAA WESEEVKGIF TVPPLSPNTP LGHPQLRVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27147207666ATERF1
3gcc_A9e-27147207666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ404787e-52ERF5_TOBAC; Ethylene-responsive transcription factor 5
SwissprotQ8VY901e-52EF105_ARATH; Ethylene-responsive transcription factor ERF105
STRINGAT5G51190.13e-50(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-50ERF family protein